Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Snx14Sorting nexin-14. (944 aa)    
Predicted Functional Partners:
Snx13
Sorting nexin-13.
   
 
 0.916
Stx12
Syntaxin-12; Belongs to the syntaxin family.
     
 0.687
RPS6KA
Ribosomal protein S6 kinase 2 alpha.
    
 0.686
Sec13
Protein SEC13-like protein; Belongs to the WD repeat SEC13 family.
     
 0.686
SNX12
Sorting nexin-12.
     
 0.675
MCTP2
Multiple C2 and transmembrane domain-containing protein 2.
      
 0.671
SEC22B
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
     
 0.663
KIF18B
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
     
 0.661
Ykt6
Synaptobrevin-like protein YKT6; Belongs to the synaptobrevin family.
     
 0.661
RPS6KB1
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 0.658
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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