Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NemfNuclear export mediator factor Nemf. (845 aa)    
Predicted Functional Partners:
ltn1
E3 ubiquitin-protein ligase listerin.
   
 0.999
TCF25
Transcription factor 25.
   
 0.999
vms-1
Protein vms-1.
   
 0.957
T06_1079
Ubiquitin fusion degradation protein 1-like protein.
   
 0.952
RpL8
60S ribosomal protein L8.
    
  0.936
TER94
Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.
   
 0.930
SPATA5
Spermatogenesis-associated protein 5.
   
 0.930
RPL3
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
 0.924
rpl-26
60S ribosomal protein L26.
   
 0.923
RpL18A
60S ribosomal protein L18a.
    
  0.921
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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