Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_4752SPOC domain-containing protein. (1261 aa)    
Predicted Functional Partners:
snr-7
Small nuclear ribonucleoprotein G.
   
 
 0.969
Suv39h1
Histone-lysine N-methyltransferase SUV39H1.
    
 0.949
E(z)
Histone-lysine N-methyltransferase E(Z).
    
 0.815
htz-1
Histone H2A.V; Belongs to the histone H2A family.
   
 0.814
T06_1390
Uncharacterized protein.
    
 
 0.790
T06_2407
Histone H3.2.
    
 0.772
HHT2
Histone H3.2.
    
 0.772
T06_1582
Histone H3; Belongs to the histone H3 family.
    
 0.772
HHT3
Histone H3; Belongs to the histone H3 family.
    
 0.772
CHD3
Chromodomain-helicase-DNA-binding protein 3.
    
 0.764
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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