Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SOCS5Suppressor of cytokine signaling 5. (323 aa)    
Predicted Functional Partners:
sta-1
Signal transducer and activator of transcription.
    
 0.993
Pik3r3
Phosphatidylinositol 3-kinase regulatory subunit gamma.
    
 0.991
Socs7
Suppressor of cytokine signaling 7.
    
 0.990
Atg6
Beclin-1-like protein.
     
  0.988
Pik3ca
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; Belongs to the PI3/PI4-kinase family.
     
 0.986
T06_12015
Uncharacterized protein.
     
  0.985
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
     
 0.984
Tceb1
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.947
Tceb1-2
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.947
UVRAG
UV radiation resistance-associated protein.
     
  0.910
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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