Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vms-1Protein vms-1. (640 aa)    
Predicted Functional Partners:
Nemf
Nuclear export mediator factor Nemf.
   
 0.957
TER94
Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.
   
 0.949
SPATA5
Spermatogenesis-associated protein 5.
   
 0.949
Ube4b
Ubiquitin conjugation factor E4 B.
    
 
 0.854
faf2-b
FAS-associated factor 2-B.
    
 
 0.829
ltn1
E3 ubiquitin-protein ligase listerin.
    
 0.819
C18E9.6
Mitochondrial import receptor subunit TOM40-like protein.
     
 0.806
mtx-1
Metaxin-1-like protein.
     
  0.790
csnk2a1
Casein kinase II subunit alpha.
     
  0.790
Tex2
Testis-expressed sequence 2 protein.
     
  0.790
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.