Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCL2Apoptosis regulator Bcl-2. (230 aa)    
Predicted Functional Partners:
Atg6
Beclin-1-like protein.
    
 0.994
Apaf1
Apoptotic protease-activating factor 1.
    
 0.989
tp53
Cellular tumor antigen p53.
    
 0.967
bsk
Mitogen-activated protein kinase.
    
 0.967
akt2-a
RAC-beta serine/threonine-protein kinase A; Belongs to the protein kinase superfamily.
    
 0.956
porin
Voltage-dependent anion-selective channel.
    
 0.955
Csta
Cystatin-A.
    
 0.949
SIRT1
NAD-dependent protein deacetylase sirtuin-1.
    
 0.931
CASP2
Caspase-2; Belongs to the peptidase C14A family.
    
 0.930
Marf
Transmembrane GTPase Marf; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.921
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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