Smg9 protein (Trichinella sp. T6) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Smg9

Protein SMG9. (539 aa)

Predicted Functional Partners:

T06_6696

0.982

T06_10524

0.982

tsu

0.965

Smg1

0.941

T06_10955

0.941

smg-1

0.941

Smg7

0.888

SMG6

0.884

SMG7

0.870

Ogt

0.792

Your Current Organism:

Trichinella sp. T6

NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ogt	Smg9	A0A0V0W9T0	A0A0V0WBA3	UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase.	Protein SMG9.	0.792
SMG6	SMG7	A0A0V0WUB5	A0A0V0X7V5	Telomerase-binding protein EST1A.	Protein SMG7.	0.995
SMG6	Smg1	A0A0V0WUB5	A0A0V0STR2	Telomerase-binding protein EST1A.	Serine/threonine-protein kinase SMG1.	0.804
SMG6	Smg7	A0A0V0WUB5	A0A0V0X3F4	Telomerase-binding protein EST1A.	Protein SMG7.	0.996
SMG6	Smg9	A0A0V0WUB5	A0A0V0WBA3	Telomerase-binding protein EST1A.	Protein SMG9.	0.884
SMG6	T06_10524	A0A0V0WUB5	A0A0V0W822	Telomerase-binding protein EST1A.	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	0.839
SMG6	T06_10955	A0A0V0WUB5	A0A0V0T6I4	Telomerase-binding protein EST1A.	Uncharacterized protein.	0.804
SMG6	T06_6696	A0A0V0WUB5	A0A0V0UZR6	Telomerase-binding protein EST1A.	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	0.839
SMG6	smg-1	A0A0V0WUB5	A0A0V0WH96	Telomerase-binding protein EST1A.	Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.	0.804
SMG6	tsu	A0A0V0WUB5	A0A0V0X375	Telomerase-binding protein EST1A.	RNA-binding protein 8A.	0.985
SMG7	SMG6	A0A0V0X7V5	A0A0V0WUB5	Protein SMG7.	Telomerase-binding protein EST1A.	0.995
SMG7	Smg1	A0A0V0X7V5	A0A0V0STR2	Protein SMG7.	Serine/threonine-protein kinase SMG1.	0.939
SMG7	Smg7	A0A0V0X7V5	A0A0V0X3F4	Protein SMG7.	Protein SMG7.	0.997
SMG7	Smg9	A0A0V0X7V5	A0A0V0WBA3	Protein SMG7.	Protein SMG9.	0.870
SMG7	T06_10524	A0A0V0X7V5	A0A0V0W822	Protein SMG7.	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	0.777
SMG7	T06_10955	A0A0V0X7V5	A0A0V0T6I4	Protein SMG7.	Uncharacterized protein.	0.939
SMG7	T06_6696	A0A0V0X7V5	A0A0V0UZR6	Protein SMG7.	Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.	0.777
SMG7	smg-1	A0A0V0X7V5	A0A0V0WH96	Protein SMG7.	Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.	0.939
SMG7	tsu	A0A0V0X7V5	A0A0V0X375	Protein SMG7.	RNA-binding protein 8A.	0.980
Smg1	SMG6	A0A0V0STR2	A0A0V0WUB5	Serine/threonine-protein kinase SMG1.	Telomerase-binding protein EST1A.	0.804