Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spartinProtein spartin. (469 aa)    
Predicted Functional Partners:
IST1
IST1-like protein.
    
 
 0.688
T06_3647
Uncharacterized protein.
    
 
 0.688
IST1-2
IST1-like protein.
    
 
 0.688
NIPA2
Magnesium transporter NIPA2.
      
 0.678
atl2
Atlastin-2.
      
 0.602
T06_4747
Uncharacterized protein.
     
 0.510
Grip84
Gamma-tubulin complex component.
     
  0.501
PTPN23
Tyrosine-protein phosphatase non-receptor type 23.
      
 0.484
ZDHHC16
Glycerol-3-phosphate acyltransferase 4.
      
 0.476
Clec16a
Extended synaptotagmin-2; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
      
 0.474
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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