Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RB1CC1RB1-inducible coiled-coil protein 1. (1121 aa)    
Predicted Functional Partners:
Atg13
Autophagy-related protein 13-like protein.
    
 0.999
unc-51
Serine/threonine-protein kinase unc-51.
    
 0.998
T06_12015
Uncharacterized protein.
   
 0.997
ATG16L1
Autophagy-related protein 16-1.
   
 0.995
Atg6
Beclin-1-like protein.
    
 0.994
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.989
T06_3923
Protein C9orf72.
    
 0.984
inf-1
Eukaryotic initiation factor 4A.
   
 0.978
ATG12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 
 0.973
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.968
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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