Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
apl-1Beta-amyloid-like protein. (725 aa)    
Predicted Functional Partners:
APBB2
Amyloid beta A4 protein-binding family B member 2.
    
 0.988
lin-10
Protein lin-10.
   
 
 0.929
T06_15738
Vitellogenin.
    
 0.910
psen2
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
    
 
 0.901
gpd-1
Glyceraldehyde-3-phosphate dehydrogenase.
     
 0.891
Aplip1
JNK-interacting protein 1.
   
 
 0.881
NCSTN
Nicastrin.
    
 0.869
Nae1
Nedd8-activating enzyme E1 regulatory subunit.
    
 0.862
Syt11
Synaptotagmin-11.
   
 
 0.831
CD109
Antigen-like protein.
   
 0.822
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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