Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
unc-17Vesicular acetylcholine transporter unc-17. (1176 aa)    
Predicted Functional Partners:
unc-47
Vesicular GABA transporter.
     
 0.968
rab-3
Ras-related protein Rab-3.
     
 0.954
AP3B2
AP-3 complex subunit beta-1.
     
 0.919
AP1S2
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.917
unc-11
Phosphatidylinositol-binding clathrin assembly protein unc-11.
     
 0.917
unc-41
Putative stoned B-like protein.
     
 0.916
Ap3d1
AP-3 complex subunit delta-1.
     
 0.911
Ap2b1
AP complex subunit beta.
     
  0.910
Vps41
Vacuolar protein sorting-associated protein 41-like protein.
     
  0.910
Vps18
Vacuolar protein sorting-associated protein 18-like protein.
     
  0.910
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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