Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYP3A12Cytochrome P450 3A12; Belongs to the cytochrome P450 family. (445 aa)    
Predicted Functional Partners:
T06_367
Putative sulfite oxidase, mitochondrial.
     
 0.962
Med27
Mediator of RNA polymerase II transcription subunit 27.
   
 0.912
CYP4V2
Cytochrome P450 4V2; Belongs to the cytochrome P450 family.
  
 
0.871
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.844
MRE11A
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.827
CYP1A1
Cytochrome P450 1A1; Belongs to the cytochrome P450 family.
  
  
0.823
ASMTL
N-acetylserotonin O-methyltransferase-like protein.
     
 0.823
Fasn
Fatty acid synthase.
  
 0.813
HSD3B2
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 2; Belongs to the 3-beta-HSD family.
  
 0.745
TTI1
TELO2-interacting protein 1-like protein.
    
 0.742
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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