Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T06_2854ATP synthase subunit gamma. (296 aa)    
Predicted Functional Partners:
ATP5A1
ATP synthase subunit alpha, mitochondrial; Belongs to the ATPase alpha/beta chains family.
 
 0.999
ATP5G2
ATP synthase F(0) complex subunit C2, mitochondrial; Belongs to the ATPase C chain family.
  
 0.999
T06_603
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
Oscp
ATP synthase subunit O, mitochondrial.
  
 0.999
Atp5d
ATP synthase subunit delta, mitochondrial.
  
 0.999
ATPsyn-b
ATP synthase subunit b, mitochondrial.
   
 0.999
Uqcrc2
Cytochrome b-c1 complex subunit 2, mitochondrial.
   
 0.995
T06_7179
V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
  
 0.992
KDM6A
Lysine-specific demethylase 6A.
  
 0.986
PMPCB
Mitochondrial-processing peptidase subunit beta; Belongs to the peptidase M16 family.
   
 0.981
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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