Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_14653Uncharacterized protein. (413 aa)    
Predicted Functional Partners:
Slit3
Slit-like protein 3 protein.
    
 0.726
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.722
PDZD4
PDZ domain-containing protein 4.
    
 0.684
Ten-m
Teneurin-m.
    
 0.672
epha4-a
Ephrin type-A receptor 4-A.
    
 0.622
PKDCC
Protein kinase domain-containing protein, cytoplasmic.
    
 0.612
PPP2R2D
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 0.612
Tesk2
Peptidylprolyl isomerase.
    
 0.612
prpf18
Pre-mRNA-splicing factor 18.
     
 0.610
Egfr
Receptor protein-tyrosine kinase.
    
  0.603
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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