STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GTF3C5General transcription factor 3C polypeptide 5. (449 aa)    
Predicted Functional Partners:
GTF3C3
General transcription factor 3C polypeptide 3.
   
 0.988
Gtf3c1
General transcription factor 3C polypeptide 1.
   
 0.988
BDP1
Transcription factor TFIIIB component B''-like protein.
    
 0.982
Brf1
Transcription factor IIIB 90 kDa subunit.
    
 0.960
Polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.780
Gtf3c2
General transcription factor 3C polypeptide 2.
    
 0.727
tbp-1
TATA-box-binding protein.
    
 0.725
Tbpl1
TATA box-binding protein-like protein 1.
    
 0.725
IARS
Isoleucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
  0.704
BAZ1A
Bromodomain adjacent to zinc finger domain protein 1A.
    
  0.691
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.