Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_11114Uncharacterized protein. (182 aa)    
Predicted Functional Partners:
SKIV2L2
Superkiller viralicidic activity 2-like 2.
   
 0.934
T06_7822
HABP4_PAI-RBP1 domain-containing protein.
   
 
 0.874
Rpl30
60S ribosomal protein L30.
   
 
 0.775
RPS6
40S ribosomal protein S6.
   
 
 0.725
fbl
rRNA 2'-O-methyltransferase fibrillarin.
   
 
 0.714
RpL8
60S ribosomal protein L8.
   
   0.711
Zcchc8
Zinc finger CCHC domain-containing protein 8.
     
 0.708
rps3-b
40S ribosomal protein S3-A.
   
 
 0.694
RPL4
60S ribosomal protein L4.
   
   0.688
C18A3.3
Putative rRNA-processing protein EBP2-like protein.
   
   0.671
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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