Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Uba3Tyrosine--tRNA ligase. (866 aa)    
Predicted Functional Partners:
Nae1
Nedd8-activating enzyme E1 regulatory subunit.
   
 0.996
Cul1
Cullin-1; Belongs to the cullin family.
   
 0.975
Ube2h
Protein Dok-7.
    
 0.957
acr-16-2
Cullin-3; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
 0.949
cul-2
Cullin-2; Belongs to the cullin family.
   
 0.913
trip12
E3 ubiquitin-protein ligase TRIP12.
    
 0.910
CSN5
COP9 signalosome complex subunit 5.
  
 0.906
rbx1
RING-box protein 1.
    
 0.889
Ube2g1
Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family.
  
 0.885
ubc-1
Ubiquitin-conjugating enzyme E2 1.
   
 0.884
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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