Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SprtnSprT-like domain-containing protein Spartan. (828 aa)    
Predicted Functional Partners:
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.991
PTEN
annotation not available
   
    0.954
PPP2R3A
Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha.
   
    0.954
lgc-50-5
Replication factor C subunit 1; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
 0.910
TER94
Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.
   
 0.905
SPATA5
Spermatogenesis-associated protein 5.
   
 0.905
RFC3
Replication factor C subunit 3.
   
 0.874
T06_1079
Ubiquitin fusion degradation protein 1-like protein.
    
 0.853
UBB-2
Polyubiquitin-B.
    
  0.850
UBC
Polyubiquitin.
    
  0.850
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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