Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DCST1DC-STAMP domain-containing protein 1. (1140 aa)    
Predicted Functional Partners:
DCST2
DC-STAMP domain-containing protein 2.
   
  
 0.567
notch1a
Neurogenic locus notch-like protein 1.
      
 0.521
REXO1
RNA exonuclease 1-like protein.
      
 0.495
T06_11324
Uncharacterized protein; Belongs to the tetraspanin (TM4SF) family.
      
 0.478
Nup214
Nuclear pore complex protein.
     
  0.425
RAE1
mRNA export factor.
     
  0.425
seh1l
Nucleoporin seh1; Belongs to the WD repeat SEC13 family.
     
 0.405
npp-18
Nucleoporin SEH1.
     
 0.405
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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