Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Kcnip1Kv channel-interacting protein 1. (274 aa)    
Predicted Functional Partners:
Shal
Potassium voltage-gated channel protein Shal; Belongs to the potassium channel family.
    
 0.970
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.883
RPAP3
RNA polymerase II-associated protein 3.
    
 0.822
Tonsl
Tonsoku-like protein.
    
 0.783
Uri1
Unconventional prefoldin RPB5 interactor.
    
 0.764
pi4kb
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
    
 
 0.763
PFDN2
Prefoldin subunit 2.
    
 0.754
ruvbl2
DNA helicase; Belongs to the RuvB family.
    
 0.753
CanA-14F
Serine/threonine-protein phosphatase 2B catalytic subunit 3.
    
 0.744
Pp2B-14D
Serine/threonine-protein phosphatase 2B catalytic subunit 2.
    
 0.744
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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