Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Nprl2Nitrogen permease regulator 2-like protein. (653 aa)    
Predicted Functional Partners:
DEPDC5
DEP domain-containing protein 5.
    
 0.999
seh1l
Nucleoporin seh1; Belongs to the WD repeat SEC13 family.
   
 0.999
npp-18
Nucleoporin SEH1.
   
 0.999
wdr24
WD repeat-containing protein 24.
    
 0.999
T06_2963
WD repeat-containing protein mio-A.
    
 0.998
Rraga
Ras-related GTP-binding protein A.
    
 0.997
Sec13
Protein SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
 0.996
Szt2
Protein SZT2.
    
 0.995
NPRL3
Nitrogen permease regulator 3-like protein.
   
 0.994
RRAGD
Ras-related GTP-binding protein D.
    
 0.978
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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