Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nop16Nucleolar protein 16. (267 aa)    
Predicted Functional Partners:
nip7
60S ribosome subunit biogenesis protein NIP7-like protein.
   
 
 0.948
T06_14943
Uncharacterized protein.
   
  
 0.861
Emg1
Ribosomal RNA small subunit methyltransferase NEP1.
   
  
 0.764
spt-4
Mitochondrial pyruvate carrier; Mediates the uptake of pyruvate into mitochondria. Belongs to the mitochondrial pyruvate carrier (MPC) (TC 2.A.105) family.
   
   0.756
T06_13988
Putative H/ACA ribonucleoprotein complex subunit 2-like protein.
   
 
 0.743
RpL13
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
    
   0.716
rrbs-1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
  
 0.707
C18A3.3
Putative rRNA-processing protein EBP2-like protein.
   
   0.705
T06_10088
Ribosome biogenesis protein WDR12-like protein.
   
  
 0.666
Rpf2
Ribosome production factor 2-like protein.
   
  
 0.659
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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