Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Polr1bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1100 aa)    
Predicted Functional Partners:
Polr1a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 0.999
POLR1C
DNA-directed RNA polymerases I and III subunit RPAC1.
  
 0.998
rpb-10
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.997
rpb-8
Putative DNA-directed RNA polymerases I, II, and III subunit RPABC3.
   
 0.997
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 0.997
T06_7140
Uncharacterized protein.
   
 0.996
POLR2K
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
   
 0.994
RRN3
RNA polymerase I-specific transcription initiation factor RRN3.
   
 0.990
rpb-5
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
  
 0.987
rpb-5-2
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
  
 0.987
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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