Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
emo-1Protein transport protein Sec61 subunit gamma. (68 aa)    
Predicted Functional Partners:
SEC61B
Protein transport protein Sec61 subunit beta.
   
 0.999
Sec63
Translocation protein SEC63-like protein.
    
 0.999
Sec61a2
Protein transport protein Sec61 subunit alpha isoform 2.
   
 0.997
RpS15Aa
40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
   
  0.993
SEC62
Translocation protein SEC62.
   
 0.993
Stk39
STE20/SPS1-related proline-alanine-rich protein kinase.
   
 0.985
RPL31
60S ribosomal protein L31.
  
   0.974
SSR3
Translocon-associated protein subunit gamma.
   
 0.974
rps-25
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 
 0.967
RpL38
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 
 0.966
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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