T06_16891 protein (Trichinella sp. T6) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

T06_16891

Uncharacterized protein. (143 aa)

Predicted Functional Partners:

T06_15881

0.488

T06_1669

0.442

T06_14245

0.436

T06_2913

0.419

T06_13891

0.419

T06_55

0.419

T06_10734

0.416

T06_7709

0.416

T06_9217

0.406

T06_9833

0.405

Your Current Organism:

Trichinella sp. T6

NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T06_10734	T06_13891	A0A0V0WE02	A0A0V0VYG3	Uncharacterized protein.	Uncharacterized protein.	0.436
T06_10734	T06_1669	A0A0V0WE02	A0A0V0VL48	Uncharacterized protein.	Uncharacterized protein.	0.414
T06_10734	T06_16891	A0A0V0WE02	A0A0V0WER0	Uncharacterized protein.	Uncharacterized protein.	0.416
T06_10734	T06_2913	A0A0V0WE02	A0A0V0U295	Uncharacterized protein.	Uncharacterized protein.	0.407
T06_10734	T06_55	A0A0V0WE02	A0A0V0W7Y2	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.449
T06_10734	T06_9833	A0A0V0WE02	A0A0V0TVZ2	Uncharacterized protein.	Uncharacterized protein.	0.433
T06_13891	T06_10734	A0A0V0VYG3	A0A0V0WE02	Uncharacterized protein.	Uncharacterized protein.	0.436
T06_13891	T06_15881	A0A0V0VYG3	A0A0V0WP78	Uncharacterized protein.	Uncharacterized protein.	0.462
T06_13891	T06_1669	A0A0V0VYG3	A0A0V0VL48	Uncharacterized protein.	Uncharacterized protein.	0.508
T06_13891	T06_16891	A0A0V0VYG3	A0A0V0WER0	Uncharacterized protein.	Uncharacterized protein.	0.419
T06_13891	T06_9217	A0A0V0VYG3	A0A0V0W0U3	Uncharacterized protein.	Peptidase A2 domain-containing protein.	0.456
T06_14245	T06_16891	A0A0V0W2H0	A0A0V0WER0	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.436
T06_14245	T06_9833	A0A0V0W2H0	A0A0V0TVZ2	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.523
T06_15881	T06_13891	A0A0V0WP78	A0A0V0VYG3	Uncharacterized protein.	Uncharacterized protein.	0.462
T06_15881	T06_1669	A0A0V0WP78	A0A0V0VL48	Uncharacterized protein.	Uncharacterized protein.	0.496
T06_15881	T06_16891	A0A0V0WP78	A0A0V0WER0	Uncharacterized protein.	Uncharacterized protein.	0.488
T06_15881	T06_7709	A0A0V0WP78	A0A0V0WFN0	Uncharacterized protein.	Integrase_H2C2 domain-containing protein.	0.505
T06_15881	T06_9833	A0A0V0WP78	A0A0V0TVZ2	Uncharacterized protein.	Uncharacterized protein.	0.497
T06_1669	T06_10734	A0A0V0VL48	A0A0V0WE02	Uncharacterized protein.	Uncharacterized protein.	0.414
T06_1669	T06_13891	A0A0V0VL48	A0A0V0VYG3	Uncharacterized protein.	Uncharacterized protein.	0.508