Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znf830Zinc finger protein. (268 aa)    
Predicted Functional Partners:
T06_12874
Peptidyl-prolyl cis-trans isomerase E.
    
 0.997
SNW1
SNW domain-containing protein 1.
    
 0.996
Prpf19
Pre-mRNA-processing factor 19.
    
 0.996
AQR
Intron-binding protein aquarius.
    
 0.994
XAB2
Pre-mRNA-splicing factor SYF1.
    
 0.991
CRNKL1
Crooked neck-like protein 1.
   
 
 0.977
cyn-4
Peptidyl-prolyl cis-trans isomerase 4.
   
 0.967
SF3B2
Splicing factor 3B subunit 2.
    
 
 0.944
IK
Transcription initiation factor TFIID subunit 5.
    
  0.938
PRCC
Proline-rich protein PRCC.
   
 
 0.932
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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