Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SAKSerine/threonine-protein kinase PLK4. (804 aa)    
Predicted Functional Partners:
CEP192
Centrosomal protein.
   
 0.997
CENPJ
Centromere protein J.
   
 0.995
sas6
Spindle assembly abnormal protein 6-like protein.
   
 0.989
BTRC
F-box/WD repeat-containing protein 1A.
    
 0.985
BUB1
Mitotic checkpoint serine/threonine-protein kinase BUB1.
   
 0.967
Plk1
Serine/threonine-protein kinase PLK.
   
 0.958
ndc80
Kinetochore protein NDC80-like protein.
   
 0.957
wee-1.3
Membrane-associated tyrosine-and threonine-specific cdc2-inhibitory kinase wee-1.3.
   
 0.952
NRDE2
Golgi apparatus membrane protein TVP23-like protein B.
    
 0.942
bop1-b
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
    
 0.942
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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