Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TTC28Tetratricopeptide repeat protein 28. (1790 aa)    
Predicted Functional Partners:
dnaJ
Chaperone protein DnaJ.
   
 0.950
Clpb
Caseinolytic peptidase B-like protein.
  
 0.930
HSPA4L
Heat shock 70 kDa protein 4L.
  
 0.927
Hspa13
Heat shock 70 kDa protein 13.
  
 0.909
T06_2965
Trehalose-phosphatase.
  
 0.909
HSPA8
Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family.
  
 0.909
AHSA1
Activator of 90 kDa heat shock protein ATPase-like protein 1.
   
 
 0.901
Hsp83
Heat shock protein 83.
  
 0.895
Tonsl
Tonsoku-like protein.
    
 0.895
Trap1
Heat shock protein 75 kDa, mitochondrial.
  
 0.895
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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