Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM. (373 aa)    
Predicted Functional Partners:
E(z)
Histone-lysine N-methyltransferase E(Z).
   
 0.998
AEBP2
Zinc finger protein AEBP2.
    
 0.997
KDM6A
Lysine-specific demethylase 6A.
    
 0.994
Yy1
Transcriptional repressor protein YY1.
    
 0.990
Psc
Polycomb group protein Psc.
    
 0.988
Ints12
Integrator complex subunit 12.
   
 0.979
Cbx2
Chromobox-like protein 2.
    
 0.975
Suv39h1
Histone-lysine N-methyltransferase SUV39H1.
    
 0.973
phc2
Polyhomeotic-like protein 2.
    
 0.968
PcgF3
Polycomb group RING finger protein 3.
    
 0.967
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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