Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LYARCell growth-regulating nucleolar protein. (520 aa)    
Predicted Functional Partners:
Rpf2
Ribosome production factor 2-like protein.
   
   0.863
T06_13988
Putative H/ACA ribonucleoprotein complex subunit 2-like protein.
   
   0.826
Ppan
Suppressor of SWI4 1-like protein.
   
   0.824
RPS12
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
   0.800
Tsr1
Pre-rRNA-processing protein TSR1-like protein.
   
   0.792
T06_6060
Uncharacterized protein.
   
 
 0.776
C47E12.7
Ribosomal RNA processing protein 1-like protein.
   
 
 0.776
T06_14943
Uncharacterized protein.
   
   0.765
MPHOSPH10
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.
   
 
 0.749
Surf6
Surfeit locus protein 6.
   
    0.747
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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