Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
U2SURPU2 snRNP-associated SURP motif-containing protein. (861 aa)    
Predicted Functional Partners:
Cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.999
Sf3a2
Splicing factor 3A subunit 2.
    
 0.998
sf3b1
Splicing factor 3B subunit 1.
   
 0.997
RBM17
Splicing factor 45.
   
 0.997
SF3A1
Splicing factor 3A subunit 1.
   
 0.993
sf3b3
Splicing factor 3B subunit 3.
   
 0.991
SF3A3
Splicing factor 3A subunit 3.
   
 0.991
Dhx15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.991
sap-49
Splicing factor 3B subunit 4.
    
 0.984
ddx46
Putative ATP-dependent RNA helicase DDX46.
   
 0.980
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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