Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VLDLRVery low-density lipoprotein receptor. (965 aa)    
Predicted Functional Partners:
axin1
Axin-1.
    
 0.950
dvl3
Segment polarity protein dishevelled-like protein DVL-3.
    
 0.928
LRPAP1
Alpha-2-macroglobulin receptor-associated protein.
    
 0.918
T06_15738
Vitellogenin.
    
 0.884
SACM1L
Phosphatidylinositide phosphatase SAC1.
    
 0.804
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.795
gulp1
PTB domain-containing engulfment adapter protein 1.
    
 0.786
WNT4-2
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
  
 
 0.778
arm
Armadillo segment polarity protein.
    
 0.770
arm-2
Armadillo segment polarity protein.
    
 0.770
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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