Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PGBD3-23PiggyBac transposable element-derived protein 3. (507 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.733
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.722
unc-10
Rab-3-interacting molecule unc-10.
    
 0.640
Tonsl
Tonsoku-like protein.
    
 0.601
GART
Trifunctional purine biosynthetic protein adenosine-3.
     
  0.531
KDM6A
Lysine-specific demethylase 6A.
    
 0.522
Mrps11
28S ribosomal protein S11, mitochondrial.
    
  0.508
MRPS2
28S ribosomal protein S2, mitochondrial.
    
  0.506
mRpS6
Putative 28S ribosomal protein S6, mitochondrial.
    
  0.503
Mrps33
28S ribosomal protein S33, mitochondrial.
    
  0.501
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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