Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Frmd8FERM domain-containing protein 8. (445 aa)    
Predicted Functional Partners:
rap-1
Ras-related protein Rap-1.
    
 0.720
SEC22B
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
      
 0.719
FRMPD2
FERM and PDZ domain-containing protein 2.
      
 0.707
TLN1
Talin-1.
    
 
 0.630
TLN1-2
Talin-1.
    
 
 0.630
PLCB4
Phosphoinositide phospholipase C.
      
 0.614
FRMPD4
FERM and PDZ domain-containing protein 4.
      
 0.607
PDCD10
Programmed cell death protein 10.
    
 
 0.579
arm
Armadillo segment polarity protein.
     
 0.533
arm-2
Armadillo segment polarity protein.
     
 0.533
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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