Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Fbxo42F-box only protein 42. (660 aa)    
Predicted Functional Partners:
Cul1
Cullin-1; Belongs to the cullin family.
    
 
 0.962
rbx1
RING-box protein 1.
    
 0.906
Ccdc6
Coiled-coil domain-containing protein 6.
    
 
 0.832
sconC
E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.
    
 
 0.809
Skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 
 0.809
Mob1b
Serine/threonine-protein phosphatase.
    
  0.797
acr-16-2
Cullin-3; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
 
 0.786
Su(H)
Suppressor of hairless protein.
    
   0.778
Ppp4r1
Serine/threonine-protein phosphatase 4 regulatory subunit 1.
   
 0.710
SRP54
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
     
  0.678
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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