Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_1799Uncharacterized protein. (339 aa)    
Predicted Functional Partners:
eny2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.833
rps30a
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.833
gei-8
Gex-3-interacting protein 8.
    
 0.814
T06_12167
Uncharacterized protein.
    
 0.809
Nipped-A
Transcription-associated protein 1; Belongs to the PI3/PI4-kinase family.
    
 0.808
usp30
Ubiquitin carboxyl-terminal hydrolase.
    
 0.800
Taf12
Transcription initiation factor TFIID subunit 12.
    
 0.797
TAF5
Transcription initiation factor TFIID subunit 5.
    
 0.792
taf6
Transcription initiation factor TFIID subunit 6.
    
 0.791
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.790
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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