Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PlatTissue-type plasminogen activator. (375 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.716
apl-1
Beta-amyloid-like protein.
    
 0.590
PTK7
Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.578
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.567
RSBN1L
Putative signal peptidase complex subunit 2.
    
  0.556
HTRA2
Serine protease HTRA2, mitochondrial.
    
 0.555
SPC22
Signal peptidase complex subunit 3.
    
  0.545
T06_5306
UPF0468 protein C16orf80.
    
 
 0.543
EGF1
Fibropellin-1.
    
 0.543
CD109
Antigen-like protein.
    
 0.533
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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