Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UPF2Regulator of nonsense transcripts 2. (1238 aa)    
Predicted Functional Partners:
mag-1
Protein mago nashi-like protein.
    
 0.999
rnps1-a
RNA-binding protein with serine-rich domain 1-A.
    
 0.998
tsu
RNA-binding protein 8A.
    
 0.998
Eif4a3
Eukaryotic initiation factor 4A-III.
    
 0.996
UPF1
Regulator of nonsense transcripts 1.
   
 0.992
Upf1
Regulator of nonsense transcripts 1.
   
 0.992
SRRM1
Serine/arginine repetitive matrix protein 1.
    
 0.988
wibg
Partner of Y14 and mago.
    
 0.987
SMG6
Telomerase-binding protein EST1A.
   
 0.984
T06_913
Pinin_SDK_memA domain-containing protein.
   
 
 0.956
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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