Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rom-1Rhomboid-related protein 1. (446 aa)    
Predicted Functional Partners:
Adam10
Disintegrin and metalloproteinase domain-containing protein 10.
    
 0.695
Tace
ADAM 17-like protease.
    
 0.678
opa1
Mitochondrial dynamin-like protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
 
  
 
 0.644
Egfr
Receptor protein-tyrosine kinase.
    
 
 0.633
spi
Protein spitz.
    
 
 0.576
Nrg2
Pro-neuregulin-2, membrane-bound isoform.
   
   0.567
phb2
Prohibitin.
    
 0.555
S
Protein Star.
    
 
 0.550
psen2
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
      
 0.521
rho-1
Ras-like GTP-binding protein rhoA.
    
 
 0.513
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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