Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STAG1Cohesin subunit SA-1. (1357 aa)    
Predicted Functional Partners:
REC8
Meiotic recombination protein REC8-like protein.
   
 0.992
Pds5b
Sister chromatid cohesion protein PDS5-like protein B.
   
 0.971
smc3
Structural maintenance of chromosomes protein 3.
   
 0.959
gas-1
Structural maintenance of chromosomes protein 3; Belongs to the complex I 49 kDa subunit family.
   
 0.959
esco2
N-acetyltransferase ESCO2.
   
 0.924
Plk1
Serine/threonine-protein kinase PLK.
   
 0.917
SAK
Serine/threonine-protein kinase PLK4.
   
 0.869
Smc5
Structural maintenance of chromosomes protein 5.
   
 0.854
smc6
Structural maintenance of chromosomes protein 6.
   
 0.821
T06_16645
Uncharacterized protein.
   
 0.816
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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