STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lhfpLipoma HMGIC fusion partner-like protein. (713 aa)    
Predicted Functional Partners:
Cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
      
 0.703
Cib2
Calcium and integrin-binding family member 2.
     
 0.606
Fat3
Protocadherin Fat 3.
    
 0.596
Fat3-2
Protocadherin Fat 3.
    
 0.596
CadN
Neural-cadherin; Cadherins are calcium-dependent cell adhesion proteins.
    
 0.595
ds-2
Protein dachsous.
    
 0.595
ds
Protein dachsous.
    
 0.570
Fat4
Protocadherin Fat 4.
    
 0.570
T06_1294
Uncharacterized protein.
    
 0.570
Sned1-2
Sushi, nidogen and EGF-like domain-containing protein 1.
    
 0.570
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.