Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB2Ras-related protein Rab-2. (241 aa)    
Predicted Functional Partners:
elp4
Elongator complex protein 4.
    
 0.939
Ica1
Islet cell autoantigen 1.
    
 
 0.912
Rab7a
Ras-related protein Rab-7a.
   
 0.907
Evi5
Ecotropic viral integration site 5-like protein.
    
 0.872
Rab14
Ras-related protein Rab-14.
  
 
0.865
Gdi1
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.851
arl8ba
ADP-ribosylation factor-like protein 8B-A.
   
 
 0.850
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.850
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.846
T06_3097
Uncharacterized protein.
   
  0.843
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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