Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TBX2T-box transcription factor TBX2. (662 aa)    
Predicted Functional Partners:
akt2-a
RAC-beta serine/threonine-protein kinase A; Belongs to the protein kinase superfamily.
    
 0.917
MAPK1
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
    
  0.888
mapk14
Mitogen-activated protein kinase.
    
  0.839
nkx2.2a
Homeobox protein Nkx-2.2a.
    
 0.809
bmp4
Bone morphogenetic protein 4.
    
 0.766
tyr-3-2
Putative tyrosinase-like protein tyr-3.
    
 0.724
Mxi1
Max dimerization protein 3.
    
 0.718
Max
Protein max.
    
 0.718
foxa2-a
Forkhead box protein A2-A.
    
 0.715
RUNX1
Runt-related transcription factor 1.
    
 0.714
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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