STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dpy-19C-mannosyltransferase dpy-19. (688 aa)    
Predicted Functional Partners:
KDSR
PRKCA-binding protein.
      
 0.702
PIGB
Mannosyltransferase.
      
 0.684
HIPK1
Homeodomain-interacting protein kinase 1.
      
 0.512
Tsr1
Pre-rRNA-processing protein TSR1-like protein.
      
 0.505
Rtfdc1
Protein RTF2-like protein.
   
  
 0.491
Ndufaf2
EGF domain-specific O-linked N-acetylglucosamine transferase.
      
 0.475
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.