Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prpf18Pre-mRNA-splicing factor 18. (338 aa)    
Predicted Functional Partners:
Prpf8
Pre-mRNA-processing-splicing factor 8.
    
 0.998
Snrnp200
U5 small nuclear ribonucleoprotein helicase.
    
 0.997
EFTUD2
U5 small nuclear ribonucleoprotein component.
    
 0.997
K07C5.6
Pre-mRNA-splicing factor SLU7.
  
 0.995
snr-7
Small nuclear ribonucleoprotein G.
    
  0.993
PRPF4
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
   
 
 0.992
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
   
 
 0.992
Txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
     
 0.991
Cdc40
Pre-mRNA-processing factor 17.
   
 0.990
Prpf6
Pre-mRNA-processing factor 6.
   
 
 0.988
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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