Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T06_9142Uncharacterized protein. (258 aa)    
Predicted Functional Partners:
got2
Aspartate aminotransferase.
    
 0.893
T01C8.5
Aspartate aminotransferase.
    
 0.893
CCBL2
Kynurenine--oxoglutarate transaminase 3.
  
 
 0.893
Ddc
Aromatic-L-amino-acid decarboxylase.
    
 0.857
NNT
NAD(P) transhydrogenase, mitochondrial.
    
 0.855
Bcat1
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
    
 0.841
alh-13
Putative delta-1-pyrroline-5-carboxylate synthase.
  
  
 0.833
gpt2
Alanine aminotransferase 2.
  
 
 0.778
GCSH
Glycine cleavage system H protein, mitochondrial.
    
 0.759
SLC34A1-2
Transketolase-like protein 2.
  
 
 0.742
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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