Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RCC1Regulator of chromosome condensation. (686 aa)    
Predicted Functional Partners:
T06_10646
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.997
Rangap1
Ran GTPase-activating protein 1.
   
 0.989
RGPD8
RANBP2-like and GRIP domain-containing protein 8.
   
 0.969
XPO1
Exportin-1.
    
 0.954
KPNB1
Importin subunit beta-1.
    
 
 0.952
ntmt1-b
N-terminal Xaa-Pro-Lys N-methyltransferase 1.
    
 
 0.850
UBE2I
SUMO-conjugating enzyme UBC9.
    
 0.822
ube2ia-2
SUMO-conjugating enzyme UBC9-A; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.822
ube2ia-3
SUMO-conjugating enzyme UBC9-A.
    
 0.822
ube2ia-4
SUMO-conjugating enzyme UBC9-A; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.822
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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