Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
URM1N-chimaerin. (699 aa)    
Predicted Functional Partners:
Plk1
Serine/threonine-protein kinase PLK.
   
 0.861
rho-1
Ras-like GTP-binding protein rhoA.
    
 0.861
Dnmbp
Dynamin-binding protein.
    
 
 0.854
Rhou
Rho-related GTP-binding protein RhoU.
    
 0.839
Rac1
Ras-related C3 botulinum toxin substrate 1.
    
 0.839
Rac1-2
Ras-related C3 botulinum toxin substrate 1.
    
 0.839
NCK2
Cytoplasmic protein NCK2.
    
 0.837
tag-325
WW domain-containing protein.
    
 0.815
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
     
  0.790
F52C9.5-5
Uncharacterized protein.
    
 0.778
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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