Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PEPCKPhosphoenolpyruvate carboxykinase [GTP]. (726 aa)    
Predicted Functional Partners:
pyc-1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
   
 
 0.967
enol-1
Enolase.
     
 0.960
MDH1
Malate dehydrogenase.
    
 0.941
C04C3.3
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
 0.935
AcCoAS
Acetyl-coenzyme A synthetase.
   
 
 0.911
PKLR
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.910
PKLR-2
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.910
HSP70
Malate dehydrogenase.
    
 0.906
ACLY
ATP-citrate synthase.
     
 0.901
got2
Aspartate aminotransferase.
     
 0.900
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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