Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
bli-3Dual oxidase 1. (1497 aa)    
Predicted Functional Partners:
C06E1.3
DUOXA-like protein C06E1.3.
  
 0.995
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.969
Sorbs1
Sorbin and SH3 domain-containing protein 1.
    
 0.960
mapk14
Mitogen-activated protein kinase.
    
 0.938
unc-89-3
Muscle M-line assembly protein unc-89.
   
 0.938
MAPK1
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
    
 0.913
PRDM1
PR domain zinc finger protein 1.
   
 0.910
CaMKII
Calcium/calmodulin-dependent protein kinase type II alpha chain.
    
 0.884
MET
Nicotinamide phosphoribosyltransferase.
     
  0.877
MMP20
Matrix metalloproteinase-20.
   
 
 0.868
Your Current Organism:
Trichinella sp. T6
NCBI taxonomy Id: 92179
Other names: T. sp. T6, Trichinella T6
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